With their twelfth-round selection in the 2025 MLB Draft, the 373rd overall pick, the Mets selected Truman Pauley, a right-handed pitcher from Harvard University.
With their eleventh-round selection in the 2025 MLB Draft, the 343rd overall pick, the Mets selected Wyatt Vincent, an outfielder from Nixa High School in Nixa, Missouri.
With their tenth-round selection in the 2025 MLB Draft, the 313rd overall pick, the Mets selected Tyler McLoughlin, a right-handed pitcher from the University of Georgia.
With their ninth-round selection in the 2025 MLB Draft, the 283rd overall pick, the Mets selected Anthony Frobose, a shortstop from Lakeland High School in Shrub Oak, New York.